Here is the association table of sample names and conditions, colored with respect to condition color used in figures.

File.names Conditions
SCV028 MOI_50
SCV029 MOI_500
SCV030 MOI_5000

The Aim of Distriburion Analysis

This part of document includes figures representing the distribution of labels associated with samples. Can give idea about percentage distributions of classes (like: “no signal”, “infection”, “infection&lysis”) and distribution of problematic samples (like: “dirt”, “dried out”, “multiple infections”)

Distibutions

Here once more the figures side by side

Distribution of DDOM

The Aim of Single Variable Analysis

This part of document includes single variable figures associated with samples. We focus on 5 parameters: maximum, shape, midpoint, infection time, start point. For all parameters we investigate either the entire set of infections (i.e both “infection” and “infection & lysis”), or we only investigate the “infection & lysis” cases.

For each figure we include tables showing p-values from t.test, Mann-Whitney U Test (wilcox.test), ,ean differences between conditions and the effect size. The tables also show the sample size for each condition.

Maximum

ttest. adjusted p values

Maximum Distribution (inf + infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 1.00000 0.46131 92
MOI_500 1.00000 1.00000 0.46131 127
MOI_5000 0.46131 0.46131 1.00000 190
numSamples 92 127 190

Mann-Whitney U Test, adjusted p values

Maximum Distribution (inf + infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 1.00000 0.63537 92
MOI_500 1.00000 1.00000 0.63537 127
MOI_5000 0.63537 0.63537 1.00000 190
numSamples 92 127 190

Diffrence between means

Maximum Distribution (inf + infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 0.00000 0.05605 0.20385 92
MOI_500 0.05605 0.00000 0.14780 127
MOI_5000 0.20385 0.14780 0.00000 190
numSamples 92 127 190

effect size needed for Power = 0.95 and sig.level = 0.05

Maximum Distribution (inf + infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 4.795e-01 4.353e-01 4.275e-01 92
MOI_500 4.353e-01 3.899e-01 3.780e-01 127
MOI_5000 4.275e-01 3.780e-01 3.569e-01 190
numSamples 92 127 190

ttest. adjusted p values

Maximum Distribution (infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 1.00000 1.00000 45
MOI_500 1.00000 1.00000 1.00000 80
MOI_5000 1.00000 1.00000 1.00000 159
numSamples 45 80 159

Mann-Whitney U Test, adjusted p values

Maximum Distribution (infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 1.00000 1.00000 45
MOI_500 1.00000 1.00000 1.00000 80
MOI_5000 1.00000 1.00000 1.00000 159
numSamples 45 80 159

Diffrence between means

Maximum Distribution (infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 0.00000 0.05547 0.06549 45
MOI_500 0.05547 0.00000 0.01002 80
MOI_5000 0.06549 0.01002 0.00000 159
numSamples 45 80 159

effect size needed for Power = 0.95 and sig.level = 0.05

Maximum Distribution (infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 7.380e-01 6.249e-01 5.956e-01 45
MOI_500 6.249e-01 5.069e-01 4.648e-01 80
MOI_5000 5.956e-01 4.648e-01 4.003e-01 159
numSamples 45 80 159

ttest. adjusted p values

Maximum Distribution (inf)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 1.00000 1.00000 47
MOI_500 1.00000 1.00000 1.00000 47
MOI_5000 1.00000 1.00000 1.00000 31
numSamples 47 47 31

Mann-Whitney U Test, adjusted p values

Maximum Distribution (inf)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 1.00000 1.00000 47
MOI_500 1.00000 1.00000 1.00000 47
MOI_5000 1.00000 1.00000 1.00000 31
numSamples 47 47 31

Diffrence between means

Maximum Distribution (inf)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 0.00000 0.01724 0.11142 47
MOI_500 0.01724 0.00000 0.12866 47
MOI_5000 0.11142 0.12866 0.00000 31
numSamples 47 47 31

effect size needed for Power = 0.95 and sig.level = 0.05

Maximum Distribution (inf)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 5.160e-01 4.967e-01 5.819e-01 47
MOI_500 4.967e-01 4.767e-01 5.604e-01 47
MOI_5000 5.819e-01 5.604e-01 6.431e-01 31
numSamples 47 47 31

Here are the figures side by side

Following is the violin graph representing the distribution of maximums

Slope

ttest. adjusted p values

Slope Distribution (inf + infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.01672 0.00000 92
MOI_500 0.01672 1.00000 0.00408 127
MOI_5000 0.00000 0.00408 1.00000 190
numSamples 92 127 190

Mann-Whitney U Test, adjusted p values

Slope Distribution (inf + infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.01164 0.00000 92
MOI_500 0.01164 1.00000 0.01560 127
MOI_5000 0.00000 0.01560 1.00000 190
numSamples 92 127 190

Diffrence between means

Slope Distribution (inf + infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 0.00000 0.17379 0.44406 92
MOI_500 0.17379 0.00000 0.27027 127
MOI_5000 0.44406 0.27027 0.00000 190
numSamples 92 127 190

effect size needed for Power = 0.95 and sig.level = 0.05

Slope Distribution (inf + infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 2.403e-01 2.388e-01 3.466e-01 92
MOI_500 2.388e-01 2.324e-01 3.207e-01 127
MOI_5000 3.466e-01 3.207e-01 3.587e-01 190
numSamples 92 127 190

ttest. adjusted p values

Slope Distribution (infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.63426 0.03552 45
MOI_500 0.63426 1.00000 0.06279 80
MOI_5000 0.03552 0.06279 1.00000 159
numSamples 45 80 159

Mann-Whitney U Test, adjusted p values

Slope Distribution (infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.28227 0.11490 45
MOI_500 0.28227 1.00000 1.00000 80
MOI_5000 0.11490 1.00000 1.00000 159
numSamples 45 80 159

Diffrence between means

Slope Distribution (infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 0.00000 0.09926 0.32567 45
MOI_500 0.09926 0.00000 0.22640 80
MOI_5000 0.32567 0.22640 0.00000 159
numSamples 45 80 159

effect size needed for Power = 0.95 and sig.level = 0.05

Slope Distribution (infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 4.282e-01 3.506e-01 5.061e-01 45
MOI_500 3.506e-01 2.725e-01 3.977e-01 80
MOI_5000 5.061e-01 3.977e-01 4.174e-01 159
numSamples 45 80 159

ttest. adjusted p values

Slope Distribution (inf)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.16440 0.00702 47
MOI_500 0.16440 1.00000 0.93448 47
MOI_5000 0.00702 0.93448 1.00000 31
numSamples 47 47 31

Mann-Whitney U Test, adjusted p values

Slope Distribution (inf)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.38866 0.00726 47
MOI_500 0.38866 1.00000 0.14505 47
MOI_5000 0.00726 0.14505 1.00000 31
numSamples 47 47 31

Diffrence between means

Slope Distribution (inf)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 0.00000 0.15248 0.22138 47
MOI_500 0.15248 0.00000 0.06890 47
MOI_5000 0.22138 0.06890 0.00000 31
numSamples 47 47 31

effect size needed for Power = 0.95 and sig.level = 0.05

Slope Distribution (inf)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.241e-01 2.832e-01 2.184e-01 47
MOI_500 2.832e-01 3.807e-01 3.599e-01 47
MOI_5000 2.184e-01 3.599e-01 3.035e-01 31
numSamples 47 47 31

Here are the figures side by side

Following is the violin graph representing the distribution of slopes

Midpoint

ttest. adjusted p values

Midpoint Distribution (inf + infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.00968 0.00000 92
MOI_500 0.00968 1.00000 0.00000 127
MOI_5000 0.00000 0.00000 1.00000 190
numSamples 92 127 190

Mann-Whitney U Test, adjusted p values

Midpoint Distribution (inf + infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.00060 0.00000 92
MOI_500 0.00060 1.00000 0.00000 127
MOI_5000 0.00000 0.00000 1.00000 190
numSamples 92 127 190

Diffrence between means

Midpoint Distribution (inf + infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 0.00000 1.80998 4.15851 92
MOI_500 1.80998 0.00000 2.34853 127
MOI_5000 4.15851 2.34853 0.00000 190
numSamples 92 127 190

effect size needed for Power = 0.95 and sig.level = 0.05

Midpoint Distribution (inf + infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 2.625e+00 2.269e+00 1.866e+00 92
MOI_500 2.269e+00 1.915e+00 1.513e+00 127
MOI_5000 1.866e+00 1.513e+00 1.104e+00 190
numSamples 92 127 190

ttest. adjusted p values

Midpoint Distribution (infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.96250 0.00120 45
MOI_500 0.96250 1.00000 0.00573 80
MOI_5000 0.00120 0.00573 1.00000 159
numSamples 45 80 159

Mann-Whitney U Test, adjusted p values

Midpoint Distribution (infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.15454 0.00000 45
MOI_500 0.15454 1.00000 0.00000 80
MOI_5000 0.00000 0.00000 1.00000 159
numSamples 45 80 159

Diffrence between means

Midpoint Distribution (infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 0.00000 0.33657 1.62505 45
MOI_500 0.33657 0.00000 1.28848 80
MOI_5000 1.62505 1.28848 0.00000 159
numSamples 45 80 159

effect size needed for Power = 0.95 and sig.level = 0.05

Midpoint Distribution (infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.771e+00 1.792e+00 1.649e+00 45
MOI_500 1.792e+00 1.691e+00 1.486e+00 80
MOI_5000 1.649e+00 1.486e+00 1.232e+00 159
numSamples 45 80 159

ttest. adjusted p values

Midpoint Distribution (inf)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.06598 0.00000 47
MOI_500 0.06598 1.00000 0.00009 47
MOI_5000 0.00000 0.00009 1.00000 31
numSamples 47 47 31

Mann-Whitney U Test, adjusted p values

Midpoint Distribution (inf)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.01372 0.00000 47
MOI_500 0.01372 1.00000 0.00000 47
MOI_5000 0.00000 0.00000 1.00000 31
numSamples 47 47 31

Diffrence between means

Midpoint Distribution (inf)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 0.00000 2.41177 6.47472 47
MOI_500 2.41177 0.00000 4.06295 47
MOI_5000 6.47472 4.06295 0.00000 31
numSamples 47 47 31

effect size needed for Power = 0.95 and sig.level = 0.05

Midpoint Distribution (inf)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 4.123e+00 4.059e+00 3.650e+00 47
MOI_500 4.059e+00 3.993e+00 3.557e+00 47
MOI_5000 3.650e+00 3.557e+00 2.502e+00 31
numSamples 47 47 31

Here are the figures side by side

Following is the violin graph representing the distribution of midpoints

Infection Time

ttest. adjusted p values

infection time Distribution (inf + infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.00510 0.00000 92
MOI_500 0.00510 1.00000 0.00369 127
MOI_5000 0.00000 0.00369 1.00000 190
numSamples 92 127 190

Mann-Whitney U Test, adjusted p values

infection time Distribution (inf + infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.00093 0.00000 92
MOI_500 0.00093 1.00000 0.00448 127
MOI_5000 0.00000 0.00448 1.00000 190
numSamples 92 127 190

Diffrence between means

infection time Distribution (inf + infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 0.00000 1.13845 1.85865 92
MOI_500 1.13845 0.00000 0.72019 127
MOI_5000 1.85865 0.72019 0.00000 190
numSamples 92 127 190

effect size needed for Power = 0.95 and sig.level = 0.05

infection time Distribution (inf + infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.619e+00 1.312e+00 1.084e+00 92
MOI_500 1.312e+00 9.974e-01 7.622e-01 127
MOI_5000 1.084e+00 7.622e-01 5.166e-01 190
numSamples 92 127 190

ttest. adjusted p values

infection time Distribution (infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.09898 0.00354 45
MOI_500 0.09898 1.00000 0.09898 80
MOI_5000 0.00354 0.09898 1.00000 159
numSamples 45 80 159

Mann-Whitney U Test, adjusted p values

infection time Distribution (infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.00768 0.00000 45
MOI_500 0.00768 1.00000 0.07276 80
MOI_5000 0.00000 0.07276 1.00000 159
numSamples 45 80 159

Diffrence between means

infection time Distribution (infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 0.00000 0.83256 1.35666 45
MOI_500 0.83256 0.00000 0.52410 80
MOI_5000 1.35666 0.52410 0.00000 159
numSamples 45 80 159

effect size needed for Power = 0.95 and sig.level = 0.05

infection time Distribution (infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.825e+00 1.479e+00 1.192e+00 45
MOI_500 1.479e+00 1.132e+00 8.485e-01 80
MOI_5000 1.192e+00 8.485e-01 5.664e-01 159
numSamples 45 80 159

ttest. adjusted p values

infection time Distribution (inf)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.12318 0.00300 47
MOI_500 0.12318 1.00000 0.12318 47
MOI_5000 0.00300 0.12318 1.00000 31
numSamples 47 47 31

Mann-Whitney U Test, adjusted p values

infection time Distribution (inf)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.22260 0.02298 47
MOI_500 0.22260 1.00000 0.33912 47
MOI_5000 0.02298 0.33912 1.00000 31
numSamples 47 47 31

Diffrence between means

infection time Distribution (inf)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 0.00000 1.23622 2.06428 47
MOI_500 1.23622 0.00000 0.82806 47
MOI_5000 2.06428 0.82806 0.00000 31
numSamples 47 47 31

effect size needed for Power = 0.95 and sig.level = 0.05

infection time Distribution (inf)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 2.620e+00 2.276e+00 2.233e+00 47
MOI_500 2.276e+00 1.871e+00 1.691e+00 47
MOI_5000 2.233e+00 1.691e+00 1.253e+00 31
numSamples 47 47 31

Here are the figures side by side

Following is the violin graph representing the distribution of infection time

Start point

ttest. adjusted p values

Start point (inf + infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.11924 0.00000 92
MOI_500 0.11924 1.00000 0.00003 127
MOI_5000 0.00000 0.00003 1.00000 190
numSamples 92 127 190

Mann-Whitney U Test, adjusted p values

Start point (inf + infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.01816 0.00000 92
MOI_500 0.01816 1.00000 0.00000 127
MOI_5000 0.00000 0.00000 1.00000 190
numSamples 92 127 190

Diffrence between means

Start point (inf + infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 0.00000 1.24076 3.22919 92
MOI_500 1.24076 0.00000 1.98843 127
MOI_5000 3.22919 1.98843 0.00000 190
numSamples 92 127 190

effect size needed for Power = 0.95 and sig.level = 0.05

Start point (inf + infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 2.709e+00 2.342e+00 1.934e+00 92
MOI_500 2.342e+00 1.975e+00 1.568e+00 127
MOI_5000 1.934e+00 1.568e+00 1.157e+00 190
numSamples 92 127 190

ttest. adjusted p values

start point Distribution (infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 1.00000 0.05190 45
MOI_500 1.00000 1.00000 0.05190 80
MOI_5000 0.05190 0.05190 1.00000 159
numSamples 45 80 159

Mann-Whitney U Test, adjusted p values

start point Distribution (infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.50066 0.00000 45
MOI_500 0.50066 1.00000 0.00000 80
MOI_5000 0.00000 0.00000 1.00000 159
numSamples 45 80 159

Diffrence between means

start point Distribution (infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 0.00000 0.07971 0.94672 45
MOI_500 0.07971 0.00000 1.02643 80
MOI_5000 0.94672 1.02643 0.00000 159
numSamples 45 80 159

effect size needed for Power = 0.95 and sig.level = 0.05

start point Distribution (infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.543e+00 1.749e+00 1.630e+00 45
MOI_500 1.749e+00 1.751e+00 1.549e+00 80
MOI_5000 1.630e+00 1.549e+00 1.294e+00 159
numSamples 45 80 159

ttest. adjusted p values

start point Distribution (inf)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.28214 0.00000 47
MOI_500 0.28214 1.00000 0.00087 47
MOI_5000 0.00000 0.00087 1.00000 31
numSamples 47 47 31

Mann-Whitney U Test, adjusted p values

start point Distribution (inf)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.13192 0.00000 47
MOI_500 0.13192 1.00000 0.00003 47
MOI_5000 0.00000 0.00003 1.00000 31
numSamples 47 47 31

Diffrence between means

start point Distribution (inf)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 0.00000 1.79366 5.44258 47
MOI_500 1.79366 0.00000 3.64892 47
MOI_5000 5.44258 3.64892 0.00000 31
numSamples 47 47 31

effect size needed for Power = 0.95 and sig.level = 0.05

start point Distribution (inf)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 4.577e+00 4.401e+00 3.997e+00 47
MOI_500 4.401e+00 4.218e+00 3.739e+00 47
MOI_5000 3.997e+00 3.739e+00 2.578e+00 31
numSamples 47 47 31

Here are the figures side by side

Following is the violin graph representing the distribution of start point

The Aim

This document includes double variable figures associated with samples. For all parameters we investigate either the entire set of infections (i.e both “infection” and “infection & lysis”), or we only investigate the “infection & lysis” cases. For each graph we plot density and point versions.

The investigated parameter couples are

1.) Midpoint vs Slope 2.) Slope vs Maximum 3.) Midpoint vs Maximum

Midpoint vs Slope

Slope vs Maximum

Midpoint vs Maximum